Publications

  1. A network correspondence toolbox for quantitative evaluation of novel neuroimaging results. Kong R, Spreng RN*, Xue A, Betzel RF, Cohen JR, Damoiseaux JS, De Brigard F, Eickhoff SB, Fornito A, Gratton C, Gordon EM, Holmes AJ, Laird AR, Larson-Prior L, Nickerson LD, Pinho AL, Razi A, Sadaghiani S, Shine JM, Yendiki A, Yeo BTT*, Uddin LQ*. Nature Communications, 16(1):2930,2025. DOI: 10.1038/s41467-025-58176-9
  2. A pattern-learning algorithm associates copy number variations with brain structure and behavioural variables in an adolescent population cohort. Kopal J, Huguet G, Marotta J, Aggarwal S, Osayande N, Kumar K, Saci Z, Jean-Louis M, Chai XJ, Ge T, Yeo BTT, Thompson PM, Bearden CE, Andreassen OA, Jacquemont S, Bzdok D. Nature Biomedical Engineering, 2025. DOI: 10.1038/s41551-025-01454-0
  3. Alzheimer’s Disease Neuroimaging Initiative.  Longer scans boost prediction and cut costs in brain‑wide association studies. Ooi LQR, Orban C, Zhang S, Nichols TE, Tan TWK, Kong R, Marek S, Dosenbach NUF, Laumann TO, Gordon EM, Yap KH, Ji F, Chong JSX, Chen C, An L, Franzmeier N, Roemer‑Cassiano SN, Hu Q, Ren J, Liu H, Chopra S, Cocuzza CV, Baker JT, Zhou JH, Bzdok D, Eickhoff SB, Holmes AJ, Yeo BTT, Nature. 2025 Jul 16. DOI:10.1038/s41586-025-09250-1
  4. Autonomic physiological coupling of the global fMRI signal. Bolt T, Wang S, Nomi JS, Setton R, Gold BP, deB.Frederick B, Yeo BTT, Chen JJ, Picchioni D, Duyn JH, Spreng RN, Keilholz SD, Uddin LQ, Chang C. Nature Neuroscience, 28(6):1327-1335, 2025. DOI: 10.1038/s41593-025-01945-y
  5. Benchmarking methods for mapping functional connectivity in the brain. Liu Z-Q, Luppi AI, Hansen JY, Tian YE, Zalesky A, Yeo BTT, Fulcher BD, Misic B. Nature Methods, 22(7):1593-1602, 2025. DOI: 10.1038/s41592-025-02704-4
  6. Brain Harmony: A Multimodal Foundation Model Unifying Morphology and Function into 1D Tokens.Dong Z*, Li R*, Chong JSX, Dehestani N, Teng Y, Lin Y, Li Z, Zhang Y, Yapei X, Ooi LQR, Yeo BTTZhou JH. Conference on Neural Information Processing Systems (NeurIPS),San Diego,United States,2025. (*Joint first)  
    DOI: 10.48550/arXiv.2509.24693
  7. Brain-computer-interface-based intervention increases brain functional segregation in cognitively normal older adults. Qian X, Ng KK, Yeo SN, Loke YM, Cheung YB, Feng L, Chong MS, Ng TP, Krishnan KRR, Guan C, Lee TS, Zhou JH. Age and Ageing. 2025 Aug 29;54(9):afaf250. DOI: 10.1093/ageing/afaf250.
  8. Considering the interconnected nature of social identities in neuroimaging research. Dhamala E, Ricard JA, Uddin LQ, Galea LAM, Jacobs EG, Yip SW, Yeo BTT, Chakravarty MM, Holmes AJ. Nature Neuroscience, 28(2):222-233, 2025. DOI: 10.1038/s41593-024-01832-y
  9. Cross-dataset Evaluation of Dementia Longitudinal Progression Prediction Models. Zhang C, An L, Wulan N, Nguyen KN, Orban C, Chen P, Chen C, Zhou JH, Liu K, Yeo BTT. Human Brain Mapping, 2025. DOI: 10.1002/hbm.70280
  10. Decreased brain interstitial fluid dynamics is associated with risk of Alzheimer’s disease-related cognitive decline. Guo Y, Liu T, Chen H, Zhou L, Huang W, Zhang K, Wang X, Wang Y, Zhou JH, Chen F.  Brain Research Bulletin. 2025 May;224:111295. DOI: 10.1016/j.brainresbull.2025.111295
  11. DeepResBat: deep residual batch harmonization accounting for covariate distribution differences. An L, Zhang C, Wulan N, Zhang S, Chen P, Ji F, Ng KK, Chen C, Zhou JH, Yeo BTT. Medical Image Analysis:103354, 2025. DOI: 10.1016/j.media.2024.103354
  12. Disrupted Structure–Function Integration in Systemic Lupus Erythematosus and Its Impact on Cognitive Flexibility. Qian X, Bassett DS, Ng KK, Loo BRY, Ho RC, Mak A, Zhou JH. Human Brain Mapping. 2025 Oct;46(14):e70299.  DOI: 10.1002/hbm.70299.
  13. Distinct brain network features predict internalizing and externalizing traits in children, adolescents and adults. Qu YL, Chen J, Tam A, Ooi LQR, Dhamala E, Cocuzza CV, Zhang S, Zeng T, Lawhead C, Yeo BTT, Holmes AJ. Nature Mental Health,2025. DOI: 10.1038/s44220-025-00388-5
  14. High-Order Graphical Topology Analysis of Brain Functional Connectivity Networks Using fMRI. Ling Q, Liu A, Li Y, Mi T, Chan P, Yeo BTT, Chen X. IEEE Transactions on Neural Systems and Rehabilitation Engineering, 33:1611-1620, 2025. DOI: 10.1109/TNSRE.2025.3564293
  15. Longer scans boost prediction and cut costs in brain-wide association studies. Ooi LQR*, Orban C*, Zhang S*, Nichols TE, Tan TWK, Kong R, Marek S, Dosenbach NUF, Laumann TO, Gordon EM, Yap KH, Ji F, Chong JSX, Chen C, An L, Franzmeier N, Roemer-Cassiano SN, Hu Q, Ren J, Liu H, Chopra S, Cocuzza CV, Baker JT, Zhou JH, Bzdok D, Eickhoff SB, Holmes AJ, Yeo BTT. Nature,2025. DOI: 10.1038/s41586-025-09250-1
  16. Longitudinal changes in brain asymmetry track lifestyle and disease. Saltoun K, Yeo BTT, Paul L, Diedrichsen J, Bzdok D. Nature Communications, 16(1):5611,2025. DOI: 10.1038/s41467-025-60451-8
  17. Mind the Gap: Does Brain Age Improve Alzheimer’s Disease Prediction? Tan TWK*, Nguyen KN*, Zhang C, Kong R, Cheng SF, Ji F, Chong JSX, Chong EJY, Venketasubramanian N, Orban C, Chee MWL, Chen C, Zhou JH, Yeo BTT.  Human Brain Mapping,2025. DOI: 10.1002/hbm.70276
  18. Orbitofrontal Thickness and Network Associations as Transdiagnostic Signature of Amotivation Along the Bipolar-Schizophrenia Spectrum. Franz M, Kebets V, Berg X, Georgiadis F, Milano BA, Burrer A, Brakowski J, Kaiser S, Seifritz E, Homan P, Walton E, van Erp TGM, Turner JA, Misic B, Valk SL, Yeo BTT, Bernhardt BC, Kirschner M. Schizophrenia Bulletin, 2025. DOI: 10.1093/schbul/sbaf078,
  19. Predicting Recovery From Bilingual Aphasia With Rehabilitation Using Neurophysiological and Neuroimaging Techniques. Oey N, Guo E, Kwan M, Guan C, Zhou JH, Chew E.  Archives of Physical Medicine and Rehabilitation. 2025 Apr;106(4):e126. DOI:10.1016/j.apmr.2025.01.327
  20. Protective role of parenthood on age-related brain function in mid- to late-life. Orchard ER, Chopra S, Ooi LQR, Chen P, An L, Jamadar SD, Yeo BTT, Rutherford HJV, Holmes AJ. Proceedings of the National Academy of Sciences, 122(9):e2411245122, 2025. DOI:10.1073/pnas.2411245122
  21. Rate of brain aging associates with future executive function in Asian children and older adults. Cheng SF, Yue WL, Ng KK, Qian X, Liu S, Tan TWK, Nguyen K-N, Leong RLF, Hilal S, Cheng C-Y, Tan AP, Law EC, Gluckman PD, Chen CL,Chong YS, Meaney MJ, Chee MWL, Yeo BTT, Zhou JH.eLife, 13:RP97036, 2025. DOI: 10.7554/eLife.97036
  22. Situating the salience and parietal memory networks in the context of multiple parallel distributed networks using precision functional mapping. Kwon YH, Salvo JJ, Anderson NL, Edmonds D, Holubecki AM, Lakshman M, Yoo K, Yeo BTT, Kay K, Gratton C, Braga RM. Cell Reports, 44(1),2025. DOI: 10.1016/j.celrep.2024.115207
  23. Structural covariance network topology in individuals at clinical high risk for psychosis: the ENIGMA-CHR Study. Liu, S., Agartz, I., Allen, P. et al. Mol Psychiatry, 2025. DOI:10.1038/s41380-025-03304-6
  24. The MR neuroimaging protocol for the Accelerating Medicines Partnership Schizophrenia Program. Harms MP, Cho KIK, Anticevic A, Bolo NR, Bouix S, Campbell D,..., Zhou JH,..., Pasternek O.  Schizophr. 2025 Apr 2;11(1):52. DOI:10.1038/s41537-025-00581-6
  25. The Transdiagnostic Connectome Project: an open dataset for studying brain-behavior relationships in psychiatry. Chopra S, Cocuzza CV, Lawhead C, Ricard JA, Labache L, Patrick LM, Kumar P, Rubenstein A, Moses J, Chen L, Blankenbaker C, Gillis B, Germine LT, Harpaz-Rotem I, Yeo BTT, Baker JT, Holmes AJ. Scientific Data,12(1):923,2025. DOI: 10.1038/s41597-025-04895-z
  26. WMH-DUALTASKER: A Weakly Supervised Deep Learning Model for Automated White Matter Hyperintensities Segmentation and Visual Rating Prediction. Wu Y, Dong Z, Li HB, Chong YF, Ji F, Chong JSX, Tang NRJ, Hilal S, Fu H, Chen CL, Zhou JH.  Human Brain Mapping. 2025 Apr 15;46(6):e70212. DOI:10.1002/hbm.70212